PhD Thesis
Journals
- Haslam, S.M. and Julien, S. and Monk, C.R. and Ceroni, A. and Garden, O.A. and Dell, A.,
Characterizing the glycome of the mammalian immune system,
Immunology and Cell Biology advance online publication 26 August 2008; doi: 10.1038/icb.2008.54.
- Ceroni, A. and Maass, K. and Geyer, H. and Geyer, R. and Dell, A. and Haslam, S.M.,
GlycoWorkbench: A Tool for the Computer-Assisted Annotation of Mass Spectra of Glycans,
Journal of Proteome Research, volume 7, issue 4, 1650-1659, 2008.
- Ceroni, A. and Dell, A. and Haslam, S.M.,
The GlycanBuilder: a fast, intuitive and flexible software tool for building and displaying glycan structures.,
Source Code for Biology and Medicine, volume 2, issue 3, 2007.
- Ceroni, A. and Costa, F. and Frasconi, P.,
Classification of small molecules by two- and three-dimensional decomposition kernels,
Bioinformatics, volume 23, issue 16, pp 2038-2045, 2007.
- Passerini, A. and Punta, M. and Ceroni, A. and Rost, B. and Frasconi, P.,
Identifying Cysteines and Histidines in Transition-Metal-Binding Sites Using Support Vector Machines and Neural Networks,
Proteins: Structure Function and Bioinformatics, volume 65, Issue 2, pp 305 - 316, 2006
- Ceroni, A. and Passerini, A. and Vullo, A.,
DISULFIND: a Disulfide Bonding State and Cystein Connectivity Prediction Server,
Nucleic Acids Research, Volume 34, Web Server Issue, pp. W177 - W181, 2006.
- Ceroni, A. and Frasconi, P. and Pollastri, G,
Learning Protein Secondary Structure from Sequential and Relational Data,
Neural Networks, Neural Networks and Kernel Methods for Structured Domains, Volume 18, Issue 8, pp. 1029 - 1039, 2005.
- Ceroni, A. and Frasconi, P. and Passerini, A. and Vullo, A.,
Predicting the Disulfide Bonding State of Cysteines with Combinations of Kernel Machines,
Journal of VLSI Signal Processing, volume 35, pp 287-295, 2003.
Book chapters
- Ceroni, A. and Joshi, H.J. and Maass, K. and Ranzinger, R. and von der Lieth, C.-W.,
Informatics Tools for Glycomics: Assisted Interpretation and Annotation of Mass Spectra,
Glycoscience: Chemistry and Chemical Biology, B.O. Fraser-Reid and K. Tatsuta and J. Thiem editors, Springer, Berlin, 2008.
Proceedings
- Ceroni, A. and Frasconi, P.,
Protein Structure Assembly from Knowledge of beta-sheet Motifs and Secondary Structure,
Proceedings of WIRN04, Perugia, 2004.
- Ceroni, A. and Frasconi, P.,
On the Role of Long-Range Dependencies in Learning Protein Secondary Structure,
Proceedings of the IEEE International Joint Conference on Neural Networks 2004,
Volume 3, pp. 1899 - 1904, 2004.
- Ceroni, A. and Frasconi, P. and Passerini, A. and Vullo, A.,
A Combination of Support Vector Machines and Bidirectional Recurrent Neural Networks for Protein Secondary Structure Prediction,
Lecture Notes in Computer Science, AI*IA 2003: Advances in Artificial Intelligence,
volume 2829, pp. 142 - 153, 2003.
- Ceroni, A. and Giorgetti, G.,
Uso di Continous Density Hidden Markov Models per il problema della verifica del parlante,
Atti del VI congresso dell'Associazione Italiana per l'Intelligenza Artificiale,
Pitagora Editrice, Bologna, Italia, 1999.
Technical Reports
- Ceroni, A. and Frasconi, P. and Kelley, L.
Supervised Scoring of Protein Models using Kernels on Statistical Potentials,
DSI technical report RT 11/2005.
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- Ceroni, A. and Pelikan, M. and Goldberg, D. E.,
Convergence-Time Models for the Simple Genetic Algorithm with Finite Population,
IlliGAL technical report 2001028, 2001.
Others
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